WebGO, Gene Ontology; BP, biological process; CC, cellular component; MF, molecular function. from publication: Identification of key candidate genes and pathways in endometrial cancer: Evidence from ... The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species. More specifically, the project aims to: 1) maintain and develop its controlled vocabulary of gene and gene product attributes; 2) annotate genes and gene products, and assimilate and disseminate annotation data; and 3) provide tools for easy access to all aspects of the data provided by the project, and to enable functional interpretation of experim…
GeneSets - Bader Lab @ The University of Toronto
WebDec 15, 2016 · Functional Annotation with BioMart. The BioMart project enables users to retrieve a vast diversity of annotation data for specific organisms. Steffen Durinck and Wolfgang Huber provide an powerful interface between the R language and BioMart by providing the R package biomaRt.The following sections will introduce users to the … WebAug 14, 2024 · Irrespective of the ontology (BP, MF, or CC) and the type of FS measure, incorporation of GO enrichment significantly improved the prediction of sequence … incline village rv park lake tahoe ca
How to do GO-term analysis in R from a list of genes?
WebApr 7, 2024 · Transcriptome analysis revealed that 41,545 unigenes were detected with a length of 1388 bp from high-quality reads (Fig. S1A). 75 % of transcripts were complete according to BUSCO analysis (Fig. S1B). ... Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol., 11 (2010), pp. 1-12. CrossRef Google Scholar WebGene sets that contain genes annotated by the same ontology term. The C5 collection is divided into two subcollections, the first derived from the Gene Ontology resource (GO) … WebJan 1, 2024 · Gene Ontology enrichment analysis of cellular component for up- and down- regulated genes between normal vs tumor ovarian samples. Table 1 . The top 12 enriched gene ontology terms of down-regulated DEGs involved in BP, CC, MF according to padj<0.001, log2 FC < - 2. incline village shopping